Skip sorting if already sorted for skip list

This works around a weird error I was getting when trying to link a
translation unit that included Internal.h with libconflict-set-static.a
with clang + gnu objcopy

CMakeLists.txt

@@ -32,12 +32,7 @@ if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
 endif()
 
 add_compile_options(
-  -Werror=switch-enum
-  -Wswitch-enum
-  -Wunused-variable
-  -fPIC
-  -fdata-sections
-  -ffunction-sections
+  -Werror=switch-enum -Wswitch-enum -fPIC -fdata-sections -ffunction-sections
   -fno-jump-tables # https://github.com/llvm/llvm-project/issues/54247
 )
 
@@ -109,11 +104,19 @@ else()
   add_link_options(-Wl,--gc-sections)
 endif()
 
-if(USE_SIMD_FALLBACK)
-  add_compile_definitions(USE_SIMD_FALLBACK)
-else()
-  if(CMAKE_SYSTEM_PROCESSOR STREQUAL x86_64)
+if(NOT USE_SIMD_FALLBACK)
+  cmake_push_check_state()
+  list(APPEND CMAKE_REQUIRED_FLAGS -mavx)
+  check_include_file_cxx("immintrin.h" HAS_AVX)
+  if(HAS_AVX)
     add_compile_options(-mavx)
+    add_compile_definitions(HAS_AVX)
+  endif()
+  cmake_pop_check_state()
+
+  check_include_file_cxx("arm_neon.h" HAS_ARM_NEON)
+  if(HAS_ARM_NEON)
+    add_compile_definitions(HAS_ARM_NEON)
   endif()
 endif()
 

ConflictSet.cpp

@@ -14,16 +14,6 @@ See the License for the specific language governing permissions and
 limitations under the License.
 */
 
-#if !defined(USE_SIMD_FALLBACK) && defined(__has_include)
-#if __has_include("immintrin.h")
-#define HAS_AVX 1
-#include <immintrin.h>
-#elif __has_include("arm_neon.h")
-#define HAS_ARM_NEON 1
-#include <arm_neon.h>
-#endif
-#endif
-
 #include "ConflictSet.h"
 #include "Internal.h"
 #include "LongestCommonPrefix.h"
@@ -44,6 +34,12 @@ limitations under the License.
 #include <type_traits>
 #include <utility>
 
+#ifdef HAS_AVX
+#include <immintrin.h>
+#elif defined(HAS_ARM_NEON)
+#include <arm_neon.h>
+#endif
+
 #ifndef __SANITIZE_THREAD__
 #if defined(__has_feature)
 #if __has_feature(thread_sanitizer)
@@ -700,6 +696,8 @@ constexpr int64_t kMaxFreeListBytes = 1 << 20;
 // doesn't meet the capacity constraints, it's freed and a new node is allocated
 // with the minimum capacity. The hope is that "unfit" nodes don't get stuck in
 // the free list.
+//
+// TODO valgrind annotations
 template <class T> struct NodeAllocator {
 
   static_assert(std::derived_from<T, Node>);
@@ -736,7 +734,6 @@ template <class T> struct NodeAllocator {
     p->parent = freeList;
     freeList = p;
     freeListSize += sizeof(T) + p->partialKeyCapacity;
-    VALGRIND_MAKE_MEM_NOACCESS(p, sizeof(T) + p->partialKeyCapacity);
   }
 
   void deferRelease(T *p, Node *forwardTo) {
@@ -758,13 +755,6 @@ template <class T> struct NodeAllocator {
   void releaseDeferred() {
     if (deferredList != nullptr) {
       deferredListFront->parent = freeList;
-#ifndef NVALGRIND
-      for (auto *iter = deferredList; iter != freeList;) {
-        auto *tmp = iter;
-        iter = (T *)iter->parent;
-        VALGRIND_MAKE_MEM_NOACCESS(tmp, sizeof(T) + tmp->partialKeyCapacity);
-      }
-#endif
       freeList = std::exchange(deferredList, nullptr);
     }
     for (T *n = std::exchange(deferredListOverflow, nullptr); n != nullptr;) {
@@ -785,7 +775,6 @@ template <class T> struct NodeAllocator {
     assert(deferredList == nullptr);
     assert(deferredListOverflow == nullptr);
     for (T *iter = freeList; iter != nullptr;) {
-      VALGRIND_MAKE_MEM_DEFINED(iter, sizeof(T));
       auto *tmp = iter;
       iter = (T *)iter->parent;
       removeNode(tmp);
@@ -803,7 +792,6 @@ private:
 
   T *allocate_helper(int minCapacity, int maxCapacity) {
     if (freeList != nullptr) {
-      VALGRIND_MAKE_MEM_DEFINED(freeList, sizeof(T));
       freeListSize -= sizeof(T) + freeList->partialKeyCapacity;
       assume(freeList->partialKeyCapacity >= 0);
       assume(minCapacity >= 0);
@@ -812,11 +800,6 @@ private:
           freeList->partialKeyCapacity <= maxCapacity) {
         auto *result = freeList;
         freeList = (T *)freeList->parent;
-        VALGRIND_MAKE_MEM_UNDEFINED(result,
-                                    sizeof(T) + result->partialKeyCapacity);
-        VALGRIND_MAKE_MEM_DEFINED(&result->partialKeyCapacity,
-                                  sizeof(result->partialKeyCapacity));
-        VALGRIND_MAKE_MEM_DEFINED(&result->type, sizeof(result->type));
         return result;
       } else {
         auto *p = freeList;
@@ -5875,13 +5858,13 @@ void checkVersionsGeqOldestExtant(Node *n,
   case Type_Node0: {
   } break;
   case Type_Node3: {
-    [[maybe_unused]] auto *self = static_cast<Node3 *>(n);
+    auto *self = static_cast<Node3 *>(n);
     for (int i = 0; i < 3; ++i) {
       assert(self->childMaxVersion[i] >= oldestExtantVersion);
     }
   } break;
   case Type_Node16: {
-    [[maybe_unused]] auto *self = static_cast<Node16 *>(n);
+    auto *self = static_cast<Node16 *>(n);
     for (int i = 0; i < 16; ++i) {
       assert(self->childMaxVersion[i] >= oldestExtantVersion);
     }
@@ -5891,7 +5874,7 @@ void checkVersionsGeqOldestExtant(Node *n,
     for (int i = 0; i < 48; ++i) {
       assert(self->childMaxVersion[i] >= oldestExtantVersion);
     }
-    for ([[maybe_unused]] auto m : self->maxOfMax) {
+    for (auto m : self->maxOfMax) {
       assert(m >= oldestExtantVersion);
     }
   } break;
@@ -5900,7 +5883,7 @@ void checkVersionsGeqOldestExtant(Node *n,
     for (int i = 0; i < 256; ++i) {
       assert(self->childMaxVersion[i] >= oldestExtantVersion);
     }
-    for ([[maybe_unused]] auto m : self->maxOfMax) {
+    for (auto m : self->maxOfMax) {
       assert(m >= oldestExtantVersion);
     }
   } break;

Jenkinsfile

@@ -91,7 +91,7 @@ pipeline {
                 minio bucket: 'jenkins', credentialsId: 'jenkins-minio', excludes: '', host: 'minio.weaselab.dev', includes: 'build/*.deb,build/*.rpm,paper/*.pdf', targetFolder: '${JOB_NAME}/${BUILD_NUMBER}/${STAGE_NAME}/'
             }
         }
-        stage('gcc') {
+        stage('Release [gcc]') {
             agent {
                 dockerfile {
                     args '-v /home/jenkins/ccache:/ccache'
@@ -99,7 +99,7 @@ pipeline {
                 }
             }
             steps {
-                CleanBuildAndTest("-DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++")
+                CleanBuildAndTest("-DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_FLAGS=-DNVALGRIND")
                 recordIssues(tools: [gcc()])
             }
         }

RealDataBench.cpp

@@ -5,7 +5,7 @@
 #include <cstdio>
 #include <cstring>
 #include <fcntl.h>
-#include <span>
+#include <string_view>
 #include <sys/mman.h>
 #include <sys/stat.h>
 #include <unistd.h>
@@ -64,7 +64,7 @@ int main(int argc, const char **argv) {
     auto *const mapOriginal = begin;
     const auto sizeOriginal = size;
 
-    using StringView = std::span<const uint8_t>;
+    using StringView = std::basic_string_view<uint8_t>;
 
     StringView write;
     std::vector<StringView> reads;
@@ -78,9 +78,9 @@ int main(int argc, const char **argv) {
       end = (uint8_t *)memchr(begin, '\n', size);
 
       if (line.size() > 0 && line[0] == 'P') {
-        write = line.subspan(2, line.size());
+        write = line.substr(2, line.size());
       } else if (line.size() > 0 && line[0] == 'L') {
-        reads.push_back(line.subspan(2, line.size()));
+        reads.push_back(line.substr(2, line.size()));
       } else if (line.empty()) {
         {
           readRanges.resize(reads.size());

SkipList.cpp

@@ -796,6 +796,7 @@ struct __attribute__((visibility("hidden"))) ConflictSet::Impl {
     int temp[stripeSize];
     int stripes = (stringCount + stripeSize - 1) / stripeSize;
     StringRef values[stripeSize];
+    int64_t writeVersions[stripeSize / 2];
     int ss = stringCount - (stripes - 1) * stripeSize;
     int64_t entryDelta = 0;
     for (int s = stripes - 1; s >= 0; s--) {

apple-symbol-imports.txt

@@ -1,4 +1,3 @@
-___chkstk_darwin
 ___stack_chk_fail
 ___stack_chk_guard
 __tlv_bootstrap
@@ -6,7 +5,6 @@ _abort
 _bzero
 _free
 _malloc
-_memcmp
 _memcpy
 _memmove
 dyld_stub_binder

package_macos.sh

@@ -8,7 +8,7 @@ SRC_DIR="${0%/*}"
 BUILD_ARM="$(mktemp -d -t conflict-set-arm)"
 BUILD_X86="$(mktemp -d -t conflict-set-x86)"
 
-cmake_args=(-DCMAKE_CXX_FLAGS=-DNVALGRIND -DCPACK_PACKAGING_INSTALL_PREFIX=/usr/local -DCMAKE_CXX_COMPILER=/opt/homebrew/opt/llvm/bin/clang++)
+cmake_args=(-DCMAKE_CXX_FLAGS=-DNVALGRIND -DCPACK_PACKAGING_INSTALL_PREFIX=/usr/local)
 
 cmake -S"$SRC_DIR" -B"$BUILD_ARM" -DCMAKE_OSX_ARCHITECTURES=arm64 "${cmake_args[@]}"
 cmake --build "$BUILD_ARM" --target conflict-set --target conflict-set-static