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Author SHA1 Message Date
andrew cdbad1c013 Merge pull request 'Replace SIMD assembly with initialized Node16::index + valgrind client request' (#77) from client-request-instead-of-asm into main
Reviewed-on: weaselab/conflict-set#77
2026-08-04 00:07:19 +00:00
andrew 6d9810fe7f Poison Node48 reverseIndex slot on erase
When a Node48 loses a child, the vacated reverseIndex slot would otherwise
remain defined, letting valgrind miss reads that rely on the stale value.
Mark it undefined, mirroring the existing poisoning of the vacated children
slot.
2026-08-03 17:38:21 -04:00
andrew bae2b22e95 Replace SIMD assembly with initialized Node16::index + valgrind client request
Commit 6fed133 moved SIMD operations on Node16::index into file-level
assembly (later extended to aarch64) to avoid reading indeterminate bytes
(UB in C++). Revert that in favor of a simpler, architecture-independent
fix:

- Restore the original HAS_AVX / HAS_ARM_NEON intrinsics at the affected
  call sites, keeping the newer conflictMask16 helper and scalar fallback.
- memset Node16::index in both copy constructors (from Node3 and Node48) so
  the [numChildren, 16) tail is always initialized, making the full 16-byte
  SIMD loads well-defined. This also fixes the same latent UB in the NEON
  path and the Node16->Node16 full-array memcpy.
- Issue a VALGRIND_MAKE_MEM_UNDEFINED client request on the tail so valgrind
  still flags any read that relies on the unused slots rather than numChildren.
- Drop simd.h, simd_x86_64.S, simd_aarch64.S, and the CMake ASM wiring.
2026-08-03 17:32:41 -04:00
andrew b11e92ee0b Merge pull request 'Move aarch64 Node16 SIMD index loads into assembly' (#76) from weaselbot/conflict-set:weaselbot/issue-68 into main
Reviewed-on: weaselab/conflict-set#76
2026-08-03 13:42:45 +00:00
weaselbot e02dd41f74 Address review: drop unused bti c landing pads, fix rationale comment 2026-08-03 09:17:28 -04:00
andrew b0e326aacc Merge pull request 'ci: run MSan on arm64' (#74) from weaselbot/conflict-set:weaselbot/issue-73 into main
Reviewed-on: weaselab/conflict-set#74
2026-08-03 12:27:49 +00:00
andrew 1179c1f56e Merge pull request 'Fix ARM NEON scan helpers truncating 64-bit versions' (#75) from weaselbot/conflict-set:weaselbot/issue-69 into main
Reviewed-on: weaselab/conflict-set#75
2026-08-03 12:26:03 +00:00
andrew bdbac1556d Merge pull request 'Correct rationale in simd_x86_64.S comment' (#72) from weaselbot/conflict-set:weaselbot/issue-71 into main
Reviewed-on: weaselab/conflict-set#72
2026-08-03 04:59:26 +00:00
andrew 0103837488 Merge pull request 'Run valgrind in arm64 release in CI' (#70) from valgrind-in-arm into main
Reviewed-on: weaselab/conflict-set#70
2026-08-03 04:34:34 +00:00
weaselbot d040ed63a4 Move aarch64 Node16 SIMD index loads into assembly
The aarch64 NEON paths in getNodeIndex/getNodeIndexExists,
getChildGeq(Node16*), scan16, and checkMaxBetweenExclusiveImpl<Node16>
loaded the full 16-element Node16::index array (and the Node48
reverseIndex array via scan16) with NEON intrinsics, then masked the
result down to [0, numChildren). Only the in-use slots are initialized;
the unused bytes are indeterminate, so the wide loads were undefined
behavior in C++ (per [basic.indet]) even though the trailing lanes were
discarded. MSan reports this on x86-64; on aarch64 it is the same UB but
MSan's imprecise modeling doesn't flag it at -O0, so there is no red->green
test.

Mirror the existing x86-64 fix (commit 6fed133): implement the index
operations in file-level assembly, where loading and operating on
indeterminate values is well-defined. Add simd_aarch64.S with
find_eq_16, find_ge_16, and mask_in_range_16. AArch64 lacks pmovmskb, so
(like the prior NEON code) these return a 64-bit nibble mask rather than
a 16-bit bitmask; the C++ call sites keep their existing nibble-mask
arithmetic and only swap the inline NEON load/compare for the assembly
call. The childMaxVersion compares stay in C++ NEON intrinsics, matching
x86-64's compare16: those slots are always initialized to zero by the
allocator, so the wide loads are defined.

The assembly functions carry `bti c` landing pads and the same
aeabi_feature_and_bits attributes the compiler emits for
-mbranch-protection=standard, so the object stays BTI/PAC/GCS-compatible
(and warning-free under -z force-bti). CMakeLists.txt builds simd_aarch64.S
into the object library and the SIMD test/bench/fuzz targets on aarch64.

Closes #68
2026-08-02 23:48:28 -04:00
weaselbot 6b1f597d77 Fix ARM NEON scan helpers truncating 64-bit versions
When USE_64_BIT=1, InternalVersionT stores an int64_t, but the aarch64
NEON fast paths in scan16 (both the indexed Node48 variant and the
Node256 variant) and checkMaxBetweenExclusiveImpl(Node16) only copied the
low 32 bits of each version into uint32x4_t lanes and compared against a
truncated 32-bit readVersion. This produced wrong conflict/commit
decisions once any version exceeded 2^32 - 1.

Extract the per-version "greater than readVersion" computation into a
shared conflictMask16 helper. For 64-bit versions it uses vcgtq_s64 on
the full int64 values and narrows the resulting 16-byte mask into the
same nibble-packed layout the callers already consume. The 32-bit path is
preserved unchanged.

Closes #69
2026-08-02 23:35:32 -04:00
weaselbot 70630649d9 ci: run MSan on arm64
Add a debug-arm64 matrix entry to the test job that runs the MSan
fuzz tests on an arm64 runner. The arm instrumented libc++ toolchain
(22.1.8) is built against LLVM 22, so this entry installs clang-22
from apt.llvm.org while the existing amd64 entries keep clang-21.

Generalize the test job matrix with runner/arch/llvm_version/msan_url
fields so the runner, apt cache key, LLVM toolchain version, and MSan
toolchain download URL are selected per matrix entry.

Closes #73
2026-08-02 23:28:40 -04:00
weaselbotandandrew 0b12a037c4 Correct rationale in simd_x86_64.S comment
The SIMD operations are written in assembly because loading and
operating on indeterminate values is UB in C++ but well-defined in
assembly. msan not tracking the loads is a side effect, not the reason.
Closes #71
2026-08-03 02:37:18 +00:00
andrew 79113ecb88 Run valgrind in arm64 release in CI 2026-08-03 02:36:45 +00:00
andrew 5c16b8ee90 Add .note.gnu.property section for CET/CFI to simd_x86_64.S
The assembly file was missing the GNU property note that records
control-flow integrity (CET) support, causing hardening-check to
report 'Control flow integrity: no, not found!'.  Add the note
matching what clang emits with -fcf-protection.
2026-08-02 22:31:56 -04:00
andrew b19981ee3c Only pass -stdlib=libc++ for c++ 2026-08-02 21:34:22 -04:00
andrew 12650e2132 Update README.md 2026-08-02 21:16:27 -04:00
andrew 6fed133212 Remove UB from indeterminate value handling
Move SIMD operations on potentially-indeterminate Node16::index bytes
into file-level assembly, where loading and operating on indeterminate
values is well-defined (unlike C++). Restructure scalar fallback loops
to iterate [0, numChildren) instead of [0, kMaxNodes). Fix TrivialSpan
construction from indeterminate pointers in check::Job::init and
insertPointWritesOrSorted to only construct when end.len > 0.

Add MSan toolchain to the debug CI build to catch these issues going
forward.
2026-08-02 21:06:53 -04:00
andrew 9d15af772e Run msan in CI. Closes #66 2026-07-23 15:16:58 -04:00
andrew 22159c38c5 Add Grafana dashboard for server bench metrics 2026-07-23 13:38:56 -04:00
andrew 8afe5ec75b Add new coverage to corpus 2026-07-14 14:33:51 -04:00
andrew 6eaa0799d5 Update version
This branch is going to be 0.1.x now
2026-07-14 12:26:13 -04:00
andrew cf783a0cdb ci: move LaTeX/paper deps to amd64-only release step 2026-07-14 11:57:52 -04:00
andrew 16bd98ab12 Download mc from our minio
And remove vestigial dockerfile
2026-07-14 11:54:57 -04:00
andrew 374dcf13b7 ci: trim pre-commit deps; skip LLVM install for gcc matrix 2026-07-14 11:45:05 -04:00
andrew d96d862cea Merge pull request 'Fix null pointers passed to memcmp/memcpy in skip_list' (#65) from weaselbot/conflict-set:weaselbot/issue-64 into main
Reviewed-on: weaselab/conflict-set#65
2026-07-13 21:55:52 +00:00
weaselbot 2231c093df Fix null pointers passed to memcmp/memcpy in skip_list
In addWrites, the sizing constructor std::vector<KeyInfo>(count * 2)
was used instead of reserve(count * 2), leaving count*2 default-
constructed (null/empty key) entries that were then compared via
operator<, passing nullptr to memcmp. Switch to reserve so only real
entries exist.

Additionally guard the memcmp/memcpy calls in operator<, SkipList::less,
and copyToArena against empty spans (where data() may be nullptr), which
is reachable on the first setOldestVersion with an empty removal key.

Closes #64
2026-07-13 12:04:22 -04:00
andrew d479f16204 Merge pull request 'Return 0 instead of -1 from hash_table getBytes()' (#63) from weaselbot/conflict-set:weaselbot/issue-62 into main
Reviewed-on: weaselab/conflict-set#63
2026-07-08 13:58:42 +00:00
weaselbot dee3a8f640 Return 0 instead of -1 from hash_table getBytes()
The hash_table implementation cannot accurately track memory usage and was
returning -1 from ConflictSet::getBytes() and ConflictSet_getBytes(). That
violates the API contract that getBytes() returns a non-negative byte count.

Change both entry points to return 0 and document in ConflictSet.h that
implementations which do not track memory usage may return 0.

Add a regression test in test_conflict_set.py that loads the hash_table
implementation and verifies getBytes() is non-negative.

Closes #62
2026-07-07 11:00:52 -04:00
andrew 732d19efa1 Merge pull request 'Fix RealDataBench subspan and version API contract violations' (#61) from weaselbot/conflict-set:weaselbot/issue-58 into main
Reviewed-on: weaselab/conflict-set#61
2026-06-29 18:49:58 +00:00
andrew 9449190d02 Merge pull request 'Fix undefined behavior on empty input in strinc() and prefixRange()' (#60) from weaselbot/conflict-set:weaselbot/issue-59 into main
Reviewed-on: weaselab/conflict-set#60
2026-06-29 18:26:04 +00:00
weaselbot 4fcdc5d7e9 Fix RealDataBench subspan and version API contract violations
- Use subspan count `line.size() - 2` instead of `line.size()` to avoid reading past the line bounds, and guard lines shorter than the two-byte prefix.
- Clamp `readVersion` and `setOldestVersion` arguments to `0` so the conflict set never receives negative, non-monotonic versions during the warmup phase.

Fixes #58.
2026-06-29 14:01:23 -04:00
weaselbot 63f9a139da Fix undefined behavior on empty input in strinc() and prefixRange()
strinc() in ConflictSet.cpp used std::string_view::size() (size_t) and subtracted 1 without first checking for an empty string. For the root node, getSearchPath() returns the empty string, so every debug correctness check underflowed size_t and relied on implementation-defined conversion to signed int.

prefixRange() in Bench.cpp had the same loop shape. Although TrivialSpan::size() returns int, on an empty (or all-0xff) key the function then asserted and continued executing, allocating a zero-length buffer and writing before its start.

Changes:
- In strinc(), initialize index as signed int(str.size()) - 1 so the loop is skipped for empty input, and return ok=false cleanly.
- In prefixRange(), initialize index the same way and call std::abort() after the assert so invalid input cannot fall through to an out-of-bounds write.
- Replace C-style uint8_t casts with explicit static_casts.

Closes #59
2026-06-29 13:52:02 -04:00
andrew 8f9f345c64 Merge pull request 'Keep Python wrapper key buffers alive in WriteRange/ReadRange' (#43) from weaselbot/conflict-set:weaselbot/issue-42 into main
Reviewed-on: weaselab/conflict-set#43
Reviewed-by: andrew <andrew@weaselab.dev>
2026-06-23 01:17:45 +00:00
andrew b9b2d69dd5 Merge pull request 'Disallow copying ConflictSet in C++98/C++03' (#51) from weaselbot/conflict-set:weaselbot/issue-48 into main
Reviewed-on: weaselab/conflict-set#51
2026-06-22 23:44:59 +00:00
andrew d3c8f4afc6 Merge pull request 'Include <sys/syscall.h> in ServerBench.cpp for SYS_perf_event_open' (#44) from weaselbot/conflict-set:weaselbot/issue-41 into main
Reviewed-on: weaselab/conflict-set#44
2026-06-22 20:01:43 +00:00
andrew 549724f09e Merge pull request 'Assert return values in test_update_zero_should_commit / conflict' (#50) from weaselbot/conflict-set:weaselbot/issue-49 into main
Reviewed-on: weaselab/conflict-set#50
2026-06-22 19:29:55 +00:00
andrew 52eb13cc0b Merge pull request 'Fix CMake Unix Makefiles parallel build race for conflict-set.o' (#52) from weaselbot/conflict-set:weaselbot/issue-47 into main
Reviewed-on: weaselab/conflict-set#52
2026-06-22 19:08:09 +00:00
andrew ccd637deab We already know __cplusplus is defined 2026-06-22 14:18:33 -04:00
weaselbotandandrew 971deb477c Keep Python key buffers alive in WriteRange/ReadRange
`write()` and `read()` created _Key objects from ephemeral ctypes arrays
backed by local bytearray objects. Once the helpers returned, those local
variables were freed, leaving the C library with dangling pointers when
addWrites()/check() later read the keys.

Store the backing bytearray on the returned WriteRange/ReadRange objects
as private `_begin_buf` / `_end_buf` attributes. Python keeps them alive
for the lifetime of the range object, so the C pointer is always valid.

Closes #42
2026-06-22 14:09:18 -04:00
weaselbotandandrew ff0722728a Include <sys/syscall.h> in ServerBench.cpp for SYS_perf_event_open
`ServerBench.cpp` calls `syscall(SYS_perf_event_open, ...)` but did
not include `<sys/syscall.h>`, relying on `<unistd.h>` to transitively
provide the `SYS_*` constants. On toolchains where that does not happen,
the build fails with `SYS_perf_event_open` not declared.

Add the missing include so `server_bench` compiles on any platform that
provides `perf_event_open`.

Resolves weaselab/conflict-set#41.
2026-06-22 14:09:14 -04:00
weaselbotandandrew 60881419b8 Assert return values in test_update_zero_should_commit / conflict
Add the missing [Result.COMMIT] / [Result.CONFLICT] assertions so
that the two regression tests actually verify the expected conflict-set
outcome, not just that the calls do not crash.
2026-06-22 14:09:10 -04:00
weaselbotandandrew 4515af3662 CMake: add target-level dependencies for conflict-set-object
The custom command that links conflict-set.o depends on
$<TARGET_OBJECTS:conflict-set-object>, but that generator expression
does not create a target-level dependency.  With the Unix Makefiles
generator, parallel builds can start building the consuming libraries
before the object library's build rule is available, producing:

  gmake[3]: *** No rule to make target
  'CMakeFiles/conflict-set-object.dir/ConflictSet.cpp.o', needed by
  'conflict-set.o'.  Stop.

Add add_dependencies() so that conflict-set and conflict-set-static
cannot build until conflict-set-object has produced its object files.

Closes #47
2026-06-22 14:09:04 -04:00
weaselbot 7eaac2a184 Make ConflictSet non-copyable in C++98/C++03
`ConflictSet(const ConflictSet&)` and `operator=(const ConflictSet&)` were
only deleted for C++11 and later. In C++98/C++03 the compiler implicitly
generated public copy operations, so copying a ConflictSet shared the opaque
`Impl*` and caused a double-free on destruction.

Declare both operations private and leave them undefined when
`__cplusplus <= 199711L`, matching the standard pre-C++11 idiom for
move-only types. Guard the declarations with `defined(__cplusplus)` so
they are not exposed to C90 compilation units.

Closes #48
2026-06-22 13:43:04 -04:00
102 changed files with 2214 additions and 228 deletions
+70 -37
View File
@@ -19,15 +19,8 @@ jobs:
- name: Install dependencies
run: |
. /etc/os-release
wget -qO- https://apt.llvm.org/llvm-snapshot.gpg.key | sudo tee /etc/apt/trusted.gpg.d/apt.llvm.org.asc
echo "deb http://apt.llvm.org/${VERSION_CODENAME}/ llvm-toolchain-${VERSION_CODENAME}-21 main" | sudo tee /etc/apt/sources.list.d/llvm.list
sudo apt-get update -qq
sudo apt-get install -y \
clang-21 git nodejs pre-commit
for tool in clang clang++; do
sudo update-alternatives --install /usr/bin/${tool} ${tool} /usr/bin/${tool}-21 100
done
sudo apt-get install -y git nodejs pre-commit
- uses: actions/cache@v4
with:
@@ -45,43 +38,72 @@ jobs:
matrix:
include:
- name: 64-bit-versions
runner: ubuntu-latest-amd64
arch: amd64
llvm_version: "21"
msan_url: ""
cmake_args: -DCMAKE_CXX_FLAGS=-DUSE_64_BIT=1
- name: debug
cmake_args: -DCMAKE_BUILD_TYPE=Debug
runner: ubuntu-latest-amd64
arch: amd64
llvm_version: "21"
msan_url: https://minio.weaselab.dev/public/x86_64/msan-toolchain-21.1.8.tar.zst
cmake_args: -DCMAKE_BUILD_TYPE=Debug -DMSAN_TOOLCHAIN_PATH=/opt/msan
- name: simd-fallback
runner: ubuntu-latest-amd64
arch: amd64
llvm_version: "21"
msan_url: ""
cmake_args: -DUSE_SIMD_FALLBACK=ON
- name: gcc
runner: ubuntu-latest-amd64
arch: amd64
llvm_version: "21"
msan_url: ""
cmake_args: -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++
runs-on: ubuntu-latest-amd64
- name: debug-arm64
runner: ubuntu-latest-arm64
arch: arm64
llvm_version: "22"
msan_url: https://minio.weaselab.dev/public/aarch64/msan-toolchain-22.1.8.tar.zst
cmake_args: -DCMAKE_BUILD_TYPE=Debug -DMSAN_TOOLCHAIN_PATH=/opt/msan
runs-on: ${{ matrix.runner }}
steps:
- uses: actions/checkout@v4
- uses: actions/cache@v4
with:
path: /var/cache/apt/archives
key: apt-amd64-${{ hashFiles('.gitea/workflows/ci.yml') }}
key: apt-${{ matrix.arch }}-${{ hashFiles('.gitea/workflows/ci.yml') }}
- name: Install dependencies
- name: Install common dependencies
run: |
sudo apt-get update -qq
sudo apt-get install -y \
build-essential ccache cmake gcc g++ libc6-dbg \
ninja-build python3 valgrind zstd
sudo curl -Ls "https://minio.weaselab.dev/public/$(uname -m)/mc.RELEASE.2025-08-13T08-35-41Z" \
-o /usr/local/bin/mc && sudo chmod +x /usr/local/bin/mc
- name: Install LLVM toolchain
if: matrix.name != 'gcc'
run: |
. /etc/os-release
wget -qO- https://apt.llvm.org/llvm-snapshot.gpg.key | sudo tee /etc/apt/trusted.gpg.d/apt.llvm.org.asc
echo "deb http://apt.llvm.org/${VERSION_CODENAME}/ llvm-toolchain-${VERSION_CODENAME}-21 main" | sudo tee /etc/apt/sources.list.d/llvm.list
echo "deb http://apt.llvm.org/${VERSION_CODENAME}/ llvm-toolchain-${VERSION_CODENAME}-${{ matrix.llvm_version }} main" | sudo tee /etc/apt/sources.list.d/llvm.list
sudo apt-get update -qq
sudo apt-get install -y \
build-essential ccache clang-21 cmake gcc g++ \
libc6-dbg llvm-21 lld-21 mold ninja-build python3 valgrind zstd
sudo curl -Ls "https://dl.min.io/client/mc/release/linux-amd64/mc" \
-o /usr/local/bin/mc && sudo chmod +x /usr/local/bin/mc
clang-${{ matrix.llvm_version }} llvm-${{ matrix.llvm_version }} lld-${{ matrix.llvm_version }} mold
for tool in clang clang++ llvm-ar llvm-nm llvm-ranlib llvm-objcopy llvm-cov llvm-symbolizer lld ld.lld; do
sudo update-alternatives --install /usr/bin/${tool} ${tool} /usr/bin/${tool}-21 100
sudo update-alternatives --install /usr/bin/${tool} ${tool} /usr/bin/${tool}-${{ matrix.llvm_version }} 100
done
- uses: actions/cache@v4
with:
path: .ccache
key: ccache-${{ matrix.name }}-${{ gitea.sha }}
restore-keys: |
ccache-${{ matrix.name }}-
- name: Download MSan toolchain
if: matrix.msan_url != ''
run: |
curl -Ls "${{ matrix.msan_url }}" -o /tmp/msan-toolchain.tar.zst
sudo mkdir -p /opt/msan
sudo tar --zstd -xf /tmp/msan-toolchain.tar.zst -C /opt/msan
- name: Build
run: |
@@ -123,8 +145,10 @@ jobs:
include:
- runner: ubuntu-latest-amd64
arch: amd64
cmake_args: -DMSAN_TOOLCHAIN_PATH=/opt/msan
- runner: ubuntu-latest-arm64
arch: arm64
cmake_args: ""
runs-on: ${{ matrix.runner }}
steps:
- uses: actions/checkout@v4
@@ -141,16 +165,23 @@ jobs:
echo "deb http://apt.llvm.org/${VERSION_CODENAME}/ llvm-toolchain-${VERSION_CODENAME}-21 main" | sudo tee /etc/apt/sources.list.d/llvm.list
sudo apt-get update -qq
sudo apt-get install -y \
biber build-essential ccache clang-21 cmake devscripts \
latexmk libc6-dbg llvm-21 lld-21 mold ninja-build rpm \
texlive-bibtex-extra texlive-fonts-recommended \
texlive-latex-extra texlive-pictures valgrind zstd
sudo curl -Ls "https://dl.min.io/client/mc/release/linux-$(dpkg --print-architecture)/mc" \
build-essential ccache clang-21 cmake devscripts \
libc6-dbg llvm-21 lld-21 mold ninja-build rpm \
valgrind zstd
sudo curl -Ls "https://minio.weaselab.dev/public/$(uname -m)/mc.RELEASE.2025-08-13T08-35-41Z" \
-o /usr/local/bin/mc && sudo chmod +x /usr/local/bin/mc
for tool in clang clang++ llvm-ar llvm-nm llvm-ranlib llvm-objcopy llvm-cov llvm-symbolizer lld ld.lld; do
sudo update-alternatives --install /usr/bin/${tool} ${tool} /usr/bin/${tool}-21 100
done
- name: Install paper build dependencies
if: matrix.arch == 'amd64'
run: |
sudo apt-get install -y \
biber latexmk \
texlive-bibtex-extra texlive-fonts-recommended \
texlive-latex-extra texlive-pictures
- uses: actions/cache@v4
with:
path: .ccache
@@ -158,23 +189,25 @@ jobs:
restore-keys: |
ccache-release-${{ matrix.arch }}-
- name: Download MSan toolchain
if: matrix.arch == 'amd64'
run: |
curl -Ls "https://minio.weaselab.dev/public/x86_64/msan-toolchain-21.1.8.tar.zst" -o /tmp/msan-toolchain.tar.zst
sudo mkdir -p /opt/msan
sudo tar --zstd -xf /tmp/msan-toolchain.tar.zst -C /opt/msan
- name: Build
run: |
export CCACHE_DIR="$GITHUB_WORKSPACE/.ccache"
rm -rf build
cmake -S . -B build -G Ninja -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_FLAGS=-DNVALGRIND
cmake -S . -B build -G Ninja -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_FLAGS=-DNVALGRIND ${{ matrix.cmake_args }}
ninja -C build
ccache -s
- name: Test
run: |
cd build
# On arm64, valgrind needs the MAKE_MEM_DEFINED client requests for
# https://git.weaselab.dev/weaselab/conflict-set/issues/39, but this
# build has -DNVALGRIND, which compiles them out. Skip valgrind
# tests here; they run annotated in the test job.
ctest --no-compress-output --test-output-size-passed 100000 --test-output-size-failed 100000 ${{ matrix.arch == 'arm64' && '-E valgrind' || '' }} -T Test -j "$(nproc)" --timeout 90 > /dev/null
ctest --no-compress-output --test-output-size-passed 100000 --test-output-size-failed 100000 -T Test -j "$(nproc)" --timeout 90 > /dev/null
- name: Package
run: |
cd build
@@ -237,7 +270,7 @@ jobs:
sudo apt-get install -y \
build-essential ccache clang-21 cmake gcovr \
libc6-dbg llvm-21 lld-21 mold ninja-build python3 valgrind zstd
sudo curl -Ls "https://dl.min.io/client/mc/release/linux-amd64/mc" \
sudo curl -Ls "https://minio.weaselab.dev/public/$(uname -m)/mc.RELEASE.2025-08-13T08-35-41Z" \
-o /usr/local/bin/mc && sudo chmod +x /usr/local/bin/mc
for tool in clang clang++ llvm-ar llvm-nm llvm-ranlib llvm-objcopy llvm-cov llvm-symbolizer lld ld.lld; do
sudo update-alternatives --install /usr/bin/${tool} ${tool} /usr/bin/${tool}-21 100
+5 -4
View File
@@ -37,15 +37,16 @@ ConflictSet::ReadRange singleton(Arena &arena, TrivialSpan key) {
}
ConflictSet::ReadRange prefixRange(Arena &arena, TrivialSpan key) {
int index;
for (index = key.size() - 1; index >= 0; index--)
if ((key[index]) != 255)
int index = key.size() - 1;
for (; index >= 0; index--)
if (key[index] != 255)
break;
// Must not be called with a string that consists only of zero or more '\xff'
// bytes.
// bytes, or with an empty string (which has no finite upper bound).
if (index < 0) {
assert(false);
std::abort();
}
uint8_t *buf = new (arena) uint8_t[index + 1];
+39 -2
View File
@@ -1,7 +1,7 @@
cmake_minimum_required(VERSION 3.18)
project(
conflict-set
VERSION 0.0.14
VERSION 0.1.0
DESCRIPTION
"A data structure for optimistic concurrency control on ranges of bitwise-lexicographically-ordered keys."
HOMEPAGE_URL "https://git.weaselab.dev/weaselab/conflict-set"
@@ -103,6 +103,13 @@ option(USE_SIMD_FALLBACK
option(DISABLE_TSAN "Disable TSAN" OFF)
set(MSAN_TOOLCHAIN_PATH
""
CACHE
PATH
"Path to an MSan-instrumented libc++ toolchain. When set, an MSan fuzz_driver target is added. Must contain include/c++/v1 and lib. See build_msan_toolchain.sh to produce one."
)
# This is encouraged according to
# https://valgrind.org/docs/manual/manual-core-adv.html#manual-core-adv.clientreq
include_directories(SYSTEM ${CMAKE_CURRENT_SOURCE_DIR}/third_party/valgrind)
@@ -139,6 +146,7 @@ add_custom_command(
COMMAND_EXPAND_LISTS)
add_library(${PROJECT_NAME} SHARED ${CMAKE_BINARY_DIR}/${PROJECT_NAME}.o)
add_dependencies(${PROJECT_NAME} ${PROJECT_NAME}-object)
set_target_properties(
${PROJECT_NAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY
"${CMAKE_CURRENT_BINARY_DIR}/radix_tree")
@@ -155,6 +163,7 @@ if(HAS_VERSION_SCRIPT)
endif()
add_library(${PROJECT_NAME}-static STATIC ${CMAKE_BINARY_DIR}/${PROJECT_NAME}.o)
add_dependencies(${PROJECT_NAME}-static ${PROJECT_NAME}-object)
if(CMAKE_BUILD_TYPE STREQUAL Debug)
set_target_properties(${PROJECT_NAME}-static PROPERTIES LINKER_LANGUAGE CXX)
else()
@@ -251,7 +260,7 @@ if(CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR AND BUILD_TESTING)
endif()
endif()
# whitebox tests
# whitebox tests asan+ubsan
add_executable(fuzz_driver ConflictSet.cpp FuzzTestDriver.cpp)
target_compile_options(fuzz_driver PRIVATE ${TEST_FLAGS})
if(NOT CMAKE_CROSSCOMPILING)
@@ -266,6 +275,34 @@ if(CMAKE_SOURCE_DIR STREQUAL CMAKE_CURRENT_SOURCE_DIR AND BUILD_TESTING)
add_test(NAME conflict_set_fuzz_${hash} COMMAND fuzz_driver ${TEST})
endforeach()
# whitebox tests msan
if(MSAN_TOOLCHAIN_PATH)
add_executable(fuzz_driver_msan ConflictSet.cpp FuzzTestDriver.cpp)
target_compile_options(fuzz_driver_msan PRIVATE ${TEST_FLAGS})
if(NOT CMAKE_CROSSCOMPILING)
target_compile_options(
fuzz_driver_msan
PRIVATE -fsanitize=memory -fsanitize-memory-track-origins=2
$<$<COMPILE_LANGUAGE:CXX>:-stdlib=libc++>
-I${MSAN_TOOLCHAIN_PATH}/include/c++/v1)
target_link_options(
fuzz_driver_msan
PRIVATE
-fsanitize=memory
-fsanitize-memory-track-origins=2
-stdlib=libc++
-L${MSAN_TOOLCHAIN_PATH}/lib
LINKER:-rpath,${MSAN_TOOLCHAIN_PATH}/lib)
endif()
target_compile_definitions(fuzz_driver_msan PRIVATE ENABLE_FUZZ)
target_include_directories(fuzz_driver_msan
PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/include)
foreach(TEST ${CORPUS_TESTS})
get_filename_component(hash ${TEST} NAME)
add_test(NAME conflict_set_msan_${hash} COMMAND fuzz_driver_msan ${TEST})
endforeach()
endif()
# tsan tests
if(NOT CMAKE_CROSSCOMPILING AND NOT DISABLE_TSAN)
add_executable(tsan_driver ConflictSet.cpp FuzzTestDriver.cpp)
+110 -91
View File
@@ -488,6 +488,7 @@ inline void Node3::copyChildrenAndKeyFrom(const Node16 &other) {
inline void Node16::copyChildrenAndKeyFrom(const Node3 &other) {
copyCommon(*this, other);
memset(index, 0, sizeof(index));
memcpy(index, other.index, Node3::kMaxNodes);
memcpy(children, other.children,
Node3::kMaxNodes * sizeof(children[0])); // NOLINT
@@ -499,6 +500,12 @@ inline void Node16::copyChildrenAndKeyFrom(const Node3 &other) {
assert(children[i]->parent == &other);
children[i]->parent = this;
}
// The index bytes beyond numChildren are initialized so that the SIMD loads
// of the full 16 bytes are well-defined (reading indeterminate bytes is UB
// in C++). valgrind then treats them as undefined so that it can still flag
// any read that relies on them.
VALGRIND_MAKE_MEM_UNDEFINED(index + numChildren,
sizeof(index) - numChildren * sizeof(index[0]));
}
inline void Node16::copyChildrenAndKeyFrom(const Node16 &other) {
@@ -515,6 +522,7 @@ inline void Node16::copyChildrenAndKeyFrom(const Node16 &other) {
inline void Node16::copyChildrenAndKeyFrom(const Node48 &other) {
copyCommon(*this, other);
memset(index, 0, sizeof(index));
int i = 0;
other.bitSet.forEachSet([&](int c) {
// Suppress a false positive -Waggressive-loop-optimizations warning
@@ -528,6 +536,12 @@ inline void Node16::copyChildrenAndKeyFrom(const Node48 &other) {
++i;
});
memcpy(partialKey(), &other + 1, partialKeyLen);
// The index bytes beyond numChildren are initialized so that the SIMD loads
// of the full 16 bytes are well-defined (reading indeterminate bytes is UB
// in C++). valgrind then treats them as undefined so that it can still flag
// any read that relies on them.
VALGRIND_MAKE_MEM_UNDEFINED(index + numChildren,
sizeof(index) - numChildren * sizeof(index[0]));
}
inline void Node48::copyChildrenAndKeyFrom(const Node16 &other) {
@@ -535,6 +549,7 @@ inline void Node48::copyChildrenAndKeyFrom(const Node16 &other) {
assert(numChildren == Node16::kMaxNodes);
memset(index, -1, sizeof(index));
memset(children, 0, sizeof(children));
memset(reverseIndex, 0, sizeof(reverseIndex));
const auto z = InternalVersionT::zero;
for (auto &v : childMaxVersion) {
v = z;
@@ -554,6 +569,13 @@ inline void Node48::copyChildrenAndKeyFrom(const Node16 &other) {
std::max(maxOfMax[i >> Node48::kMaxOfMaxShift], childMaxVersion[i]);
++i;
}
// The reverseIndex bytes beyond numChildren are initialized so that the
// SIMD loads of a full 16-byte page in scan16 are well-defined (reading
// indeterminate bytes is UB in C++). valgrind then treats them as undefined
// so that it can still flag any read that relies on them.
VALGRIND_MAKE_MEM_UNDEFINED(reverseIndex + numChildren,
sizeof(reverseIndex) -
numChildren * sizeof(reverseIndex[0]));
}
inline void Node48::copyChildrenAndKeyFrom(const Node48 &other) {
@@ -580,6 +602,7 @@ inline void Node48::copyChildrenAndKeyFrom(const Node256 &other) {
copyCommon(*this, other);
memset(index, -1, sizeof(index));
memset(children, 0, sizeof(children));
memset(reverseIndex, 0, sizeof(reverseIndex));
const auto z = InternalVersionT::zero;
for (auto &v : childMaxVersion) {
v = z;
@@ -601,6 +624,13 @@ inline void Node48::copyChildrenAndKeyFrom(const Node256 &other) {
++i;
});
memcpy(partialKey(), &other + 1, partialKeyLen);
// The reverseIndex bytes beyond numChildren are initialized so that the
// SIMD loads of a full 16-byte page in scan16 are well-defined (reading
// indeterminate bytes is UB in C++). valgrind then treats them as undefined
// so that it can still flag any read that relies on them.
VALGRIND_MAKE_MEM_UNDEFINED(reverseIndex + numChildren,
sizeof(reverseIndex) -
numChildren * sizeof(reverseIndex[0]));
}
inline void Node256::copyChildrenAndKeyFrom(const Node48 &other) {
@@ -1332,8 +1362,8 @@ TaggedNodePointer getChildGeq(Node *self, int child) {
TaggedNodePointer getFirstChild(Node0 *) { return nullptr; }
TaggedNodePointer getFirstChild(Node3 *self) {
// Improves scan performance
self->children[1].prefetch();
// Don't prefetch since self->children[1] might be uninitialized and msan
// doesn't like that
return self->children[0];
}
TaggedNodePointer getFirstChild(Node16 *self) {
@@ -1995,6 +2025,8 @@ Node *erase(Node *self, WriteContext *writeContext, bool logical) {
parent48->childMaxVersion[lastChildrenIndex] = writeContext->zero;
VALGRIND_MAKE_MEM_UNDEFINED(parent48->children + lastChildrenIndex,
sizeof(parent48->children[0]));
VALGRIND_MAKE_MEM_UNDEFINED(parent48->reverseIndex + lastChildrenIndex,
sizeof(parent48->reverseIndex[0]));
if (needsDownsize(parent48)) {
downsize(parent48, writeContext);
@@ -2087,6 +2119,52 @@ compare16_avx512(const InternalVersionT *vs, InternalVersionT rv) {
}
#endif
#ifdef HAS_ARM_NEON
// Returns a uint8x16_t whose byte i is 0xff if vs[i] > readVersion and 0
// otherwise. When USE_64_BIT is set the comparison uses the full 64-bit value
// (via vcgtq_s64); otherwise it falls back to the 32-bit subtract-and-compare
// used by the original NEON fast path. The caller narrows this 16-byte vector
// into the nibble-packed (4 bits per version) mask expected by scan16 and
// checkMaxBetweenExclusiveImpl.
inline uint8x16_t conflictMask16(const InternalVersionT *vs,
InternalVersionT readVersion) {
#if USE_64_BIT
int64_t rv;
memcpy(&rv, &readVersion, sizeof(rv));
const auto rvVec = vdupq_n_s64(rv);
int32x2_t r32[8];
const auto *vsp = reinterpret_cast<const int64_t *>(vs);
for (int j = 0; j < 8; ++j) {
r32[j] = vmovn_s64(vcgtq_s64(vld1q_s64(vsp + 2 * j), rvVec));
}
uint32x4_t w4[4];
for (int k = 0; k < 4; ++k) {
w4[k] = vreinterpretq_u32_s32(vcombine_s32(r32[2 * k], r32[2 * k + 1]));
}
return vcombine_u8(
vmovn_u16(vcombine_u16(vmovn_u32(w4[0]), vmovn_u32(w4[1]))),
vmovn_u16(vcombine_u16(vmovn_u32(w4[2]), vmovn_u32(w4[3]))));
#else
uint32x4_t w4[4];
memcpy(w4, vs, sizeof(w4));
uint32_t rv;
memcpy(&rv, &readVersion, sizeof(rv));
const auto rvVec = vdupq_n_u32(rv);
int32x4_t z;
memset(&z, 0, sizeof(z));
uint16x4_t conflicting[4];
for (int i = 0; i < 4; ++i) {
conflicting[i] =
vmovn_u32(vcgtq_s32(vreinterpretq_s32_u32(vsubq_u32(w4[i], rvVec)), z));
}
return vcombine_u8(vmovn_u16(vcombine_u16(conflicting[0], conflicting[1])),
vmovn_u16(vcombine_u16(conflicting[2], conflicting[3])));
#endif
}
#endif
// Returns true if v[i] <= readVersion for all i such that begin <= is[i] < end
// Preconditions: begin <= end, end - begin < 256
template <bool kAVX512>
@@ -2107,26 +2185,10 @@ bool scan16(const InternalVersionT *vs, const uint8_t *is, int begin, int end,
uint64_t mask = vget_lane_u64(
vreinterpret_u64_u8(vshrn_n_u16(vreinterpretq_u16_u8(results), 4)), 0);
uint32x4_t w4[4];
memcpy(w4, vs, sizeof(w4));
uint32_t rv;
memcpy(&rv, &readVersion, sizeof(rv));
const auto rvVec = vdupq_n_u32(rv);
int32x4_t z;
memset(&z, 0, sizeof(z));
uint16x4_t conflicting[4];
for (int i = 0; i < 4; ++i) {
conflicting[i] =
vmovn_u32(vcgtq_s32(vreinterpretq_s32_u32(vsubq_u32(w4[i], rvVec)), z));
}
auto combined =
vcombine_u8(vmovn_u16(vcombine_u16(conflicting[0], conflicting[1])),
vmovn_u16(vcombine_u16(conflicting[2], conflicting[3])));
uint64_t compared = vget_lane_u64(
vreinterpret_u64_u8(vshrn_n_u16(vreinterpretq_u16_u8(combined), 4)), 0);
vreinterpret_u64_u8(vshrn_n_u16(
vreinterpretq_u16_u8(conflictMask16(vs, readVersion)), 4)),
0);
return !(compared & mask);
@@ -2153,12 +2215,14 @@ bool scan16(const InternalVersionT *vs, const uint8_t *is, int begin, int end,
auto inBounds = [&](unsigned c) { return c - shiftAmount < shiftUpperBound; };
uint32_t compared = 0;
for (int i = 0; i < 16; ++i) {
compared |= (vs[i] > readVersion) << i;
}
uint32_t mask = 0;
for (int i = 0; i < 16; ++i) {
mask |= inBounds(is[i]) << i;
if (vs[i] > readVersion) {
compared |= 1u << i;
if (inBounds(is[i])) {
mask |= 1u << i;
}
}
}
return !(compared & mask);
@@ -2174,26 +2238,10 @@ bool scan16(const InternalVersionT *vs, int begin, int end,
assert(begin <= end);
#if defined(HAS_ARM_NEON)
uint32x4_t w4[4];
memcpy(w4, vs, sizeof(w4));
uint32_t rv;
memcpy(&rv, &readVersion, sizeof(rv));
const auto rvVec = vdupq_n_u32(rv);
int32x4_t z;
memset(&z, 0, sizeof(z));
uint16x4_t conflicting[4];
for (int i = 0; i < 4; ++i) {
conflicting[i] =
vmovn_u32(vcgtq_s32(vreinterpretq_s32_u32(vsubq_u32(w4[i], rvVec)), z));
}
auto combined =
vcombine_u8(vmovn_u16(vcombine_u16(conflicting[0], conflicting[1])),
vmovn_u16(vcombine_u16(conflicting[2], conflicting[3])));
uint64_t conflict = vget_lane_u64(
vreinterpret_u64_u8(vshrn_n_u16(vreinterpretq_u16_u8(combined), 4)), 0);
vreinterpret_u64_u8(vshrn_n_u16(
vreinterpretq_u16_u8(conflictMask16(vs, readVersion)), 4)),
0);
conflict &= end == 16 ? -1 : (uint64_t(1) << (end << 2)) - 1;
conflict >>= begin << 2;
@@ -2250,17 +2298,9 @@ bool checkMaxBetweenExclusiveImpl(Node3 *n, int begin, int end,
auto inBounds = [&](unsigned c) { return c - shiftAmount < shiftUpperBound; };
uint32_t mask = 0;
for (int i = 0; i < Node3::kMaxNodes; ++i) {
for (int i = 0; i < self->numChildren; ++i) {
mask |= inBounds(self->index[i]) << i;
}
mask &= (1 << self->numChildren) - 1;
#ifdef __aarch64__
// The bits surviving the mask above don't derive from uninitialized slots,
// but clang 21+ on aarch64 lowers inBounds through flags+csel, which
// memcheck models imprecisely, tainting bits the mask provably clears.
// https://git.weaselab.dev/weaselab/conflict-set/issues/39
VALGRIND_MAKE_MEM_DEFINED(&mask, sizeof(mask));
#endif
if (!mask) {
return true;
}
@@ -2268,17 +2308,11 @@ bool checkMaxBetweenExclusiveImpl(Node3 *n, int begin, int end,
const bool firstRangeOk =
!child->entryPresent || child->entry.rangeVersion <= readVersion;
uint32_t compared = 0;
for (int i = 0; i < Node3::kMaxNodes; ++i) {
for (int i = 0; i < self->numChildren; ++i) {
compared |= (self->childMaxVersion[i] > readVersion) << i;
}
uint32_t compared_masked = compared & mask;
#ifdef __aarch64__
// Same imprecise csel modeling as above.
// https://git.weaselab.dev/weaselab/conflict-set/issues/39
VALGRIND_MAKE_MEM_DEFINED(&compared_masked, sizeof(compared_masked));
#endif
return !compared_masked && firstRangeOk;
return !(compared & mask) && firstRangeOk;
}
template <bool kAVX512>
@@ -2321,26 +2355,11 @@ bool checkMaxBetweenExclusiveImpl(Node16 *n, int begin, int end,
const bool firstRangeOk =
!child->entryPresent || child->entry.rangeVersion <= readVersion;
uint32x4_t w4[4];
memcpy(w4, self->childMaxVersion, sizeof(w4));
uint32_t rv;
memcpy(&rv, &readVersion, sizeof(rv));
const auto rvVec = vdupq_n_u32(rv);
int32x4_t z;
memset(&z, 0, sizeof(z));
uint16x4_t conflicting[4];
for (int i = 0; i < 4; ++i) {
conflicting[i] =
vmovn_u32(vcgtq_s32(vreinterpretq_s32_u32(vsubq_u32(w4[i], rvVec)), z));
}
auto combined =
vcombine_u8(vmovn_u16(vcombine_u16(conflicting[0], conflicting[1])),
vmovn_u16(vcombine_u16(conflicting[2], conflicting[3])));
uint64_t compared = vget_lane_u64(
vreinterpret_u64_u8(vshrn_n_u16(vreinterpretq_u16_u8(combined), 4)), 0);
vreinterpret_u64_u8(vshrn_n_u16(vreinterpretq_u16_u8(conflictMask16(
self->childMaxVersion, readVersion)),
4)),
0);
return !(compared & mask) && firstRangeOk;
@@ -2375,10 +2394,9 @@ bool checkMaxBetweenExclusiveImpl(Node16 *n, int begin, int end,
auto inBounds = [&](unsigned c) { return c - shiftAmount < shiftUpperBound; };
uint32_t mask = 0;
for (int i = 0; i < 16; ++i) {
for (int i = 0; i < self->numChildren; ++i) {
mask |= inBounds(self->index[i]) << i;
}
mask &= (1 << self->numChildren) - 1;
if (!mask) {
return true;
}
@@ -2386,7 +2404,7 @@ bool checkMaxBetweenExclusiveImpl(Node16 *n, int begin, int end,
const bool firstRangeOk =
!child->entryPresent || child->entry.rangeVersion <= readVersion;
uint32_t compared = 0;
for (int i = 0; i < 16; ++i) {
for (int i = 0; i < self->numChildren; ++i) {
compared |= (self->childMaxVersion[i] > readVersion) << i;
}
return !(compared & mask) && firstRangeOk;
@@ -3864,17 +3882,17 @@ PRESERVE_NONE void right_side_iter(Job *job, Context *context) {
void Job::init(const ConflictSet::ReadRange *read, ConflictSet::Result *result,
Node *root, int64_t oldestVersionFullPrecision) {
auto begin = TrivialSpan(read->begin.p, read->begin.len);
auto end = TrivialSpan(read->end.p, read->end.len);
if (read->readVersion < oldestVersionFullPrecision) [[unlikely]] {
*result = ConflictSet::TooOld;
continuation = complete;
} else if (end.size() == 0) {
} else if (read->end.len == 0) {
this->begin = begin;
this->n = root;
this->readVersion = InternalVersionT(read->readVersion);
this->result = result;
continuation = check::point_read_state_machine::begin;
} else {
auto end = TrivialSpan(read->end.p, read->end.len);
this->begin = begin;
this->end = end;
this->n = root;
@@ -5046,8 +5064,8 @@ struct __attribute__((visibility("hidden"))) ConflictSet::Impl {
for (int i = 0; i < count; ++i) {
const auto &w = writes[i];
auto begin = TrivialSpan(w.begin.p, w.begin.len);
auto end = TrivialSpan(w.end.p, w.end.len);
if (w.end.len > 0) {
auto end = TrivialSpan(w.end.p, w.end.len);
addWriteRange(rootParent->children[0], begin, end,
InternalVersionT(writeVersion), &writeContext);
} else {
@@ -5679,13 +5697,13 @@ std::string getPartialKeyPrintable(Node *n) {
}
std::string strinc(std::string_view str, bool &ok) {
int index;
for (index = str.size() - 1; index >= 0; index--)
if ((uint8_t &)(str[index]) != 255)
int index = static_cast<int>(str.size()) - 1;
for (; index >= 0; index--)
if (static_cast<uint8_t>(str[index]) != 255)
break;
// Must not be called with a string that consists only of zero or more
// '\xff' bytes.
// '\xff' bytes, and the empty string has no successor.
if (index < 0) {
ok = false;
return {};
@@ -5693,7 +5711,8 @@ std::string strinc(std::string_view str, bool &ok) {
ok = true;
auto r = std::string(str.substr(0, index + 1));
((uint8_t &)r[r.size() - 1])++;
auto &last = r[r.size() - 1];
last = static_cast<char>(static_cast<uint8_t>(last) + 1);
return r;
}
-46
View File
@@ -1,46 +0,0 @@
FROM ubuntu:rolling
WORKDIR /tmp
ENV HOME=/tmp
RUN chmod -R 777 /tmp
# Install apt dependencies
RUN apt-get update
RUN apt-get upgrade -y
RUN TZ=America/Los_Angeles DEBIAN_FRONTEND=noninteractive apt-get install -y \
biber \
build-essential \
ccache \
clang \
cmake \
curl \
devscripts \
gcovr \
git \
latexmk \
libc6-dbg \
llvm \
mold \
ninja-build \
nodejs \
pre-commit \
python3-requests \
rpm \
texlive-bibtex-extra \
texlive-fonts-recommended \
texlive-latex-extra \
texlive-pictures \
valgrind \
wget \
zstd
# MinIO client, for uploading build artifacts
RUN curl -Ls "https://dl.min.io/client/mc/release/linux-$(dpkg --print-architecture)/mc" \
-o /usr/local/bin/mc && chmod +x /usr/local/bin/mc
ENV CC=clang
ENV CXX=clang++
# Try to have all the pre-commit hooks we'll need already initialized
COPY .pre-commit-config.yaml /tmp/
RUN git init && pre-commit install-hooks
+8 -3
View File
@@ -96,7 +96,9 @@ void ConflictSet::setOldestVersion(int64_t oldestVersion) {
return impl->setOldestVersion(oldestVersion);
}
int64_t ConflictSet::getBytes() const { return -1; }
// The hash_table implementation does not track memory usage, so return 0 to
// satisfy the API contract that getBytes() returns a non-negative value.
int64_t ConflictSet::getBytes() const { return 0; }
void ConflictSet::getMetricsV1(MetricsV1 **metrics, int *count) const {
*metrics = nullptr;
@@ -161,7 +163,10 @@ __attribute__((__visibility__("default"))) void ConflictSet_destroy(void *cs) {
}
__attribute__((__visibility__("default"))) int64_t
ConflictSet_getBytes(void *cs) {
using Impl = ConflictSet::Impl;
return -1;
(void)cs;
// The hash_table implementation does not track memory usage, so return 0 to
// satisfy the API contract that ConflictSet_getBytes returns a non-negative
// value.
return 0;
}
}
+23 -23
View File
@@ -7,10 +7,10 @@ Hardware for all benchmarks is an AMD Ryzen 9 7900 with (2x32GB) 5600MT/s CL28-3
```
$ clang++ --version
Ubuntu clang version 20.0.0 (++20241120082228+86734c857724-1~exp1~20241120202359.554)
Ubuntu clang version 21.1.8 (6ubuntu1)
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm-20/bin
InstalledDir: /usr/lib/llvm-21/bin
```
# Microbenchmark
@@ -19,30 +19,30 @@ InstalledDir: /usr/lib/llvm-20/bin
| ns/op | op/s | err% | ins/op | cyc/op | IPC | bra/op | miss% | total | benchmark
|--------------------:|--------------------:|--------:|----------------:|----------------:|-------:|---------------:|--------:|----------:|:----------
| 161.29 | 6,200,056.17 | 0.1% | 3,014.03 | 831.04 | 3.627 | 504.59 | 0.0% | 1.93 | `point reads`
| 158.32 | 6,316,160.64 | 0.1% | 2,954.16 | 815.80 | 3.621 | 490.17 | 0.0% | 1.89 | `prefix reads`
| 237.39 | 4,212,409.50 | 0.2% | 3,592.41 | 1,233.96 | 2.911 | 629.31 | 0.0% | 2.84 | `range reads`
| 442.11 | 2,261,878.94 | 0.0% | 4,450.57 | 2,314.25 | 1.923 | 707.92 | 2.1% | 5.28 | `point writes`
| 439.89 | 2,273,308.53 | 0.1% | 4,410.22 | 2,302.29 | 1.916 | 694.74 | 2.1% | 5.25 | `prefix writes`
| 290.96 | 3,436,936.78 | 0.0% | 2,315.38 | 1,528.68 | 1.515 | 396.69 | 3.3% | 3.49 | `range writes`
| 476.93 | 2,096,762.02 | 0.6% | 6,999.33 | 2,484.94 | 2.817 | 1,251.73 | 1.3% | 0.06 | `monotonic increasing point writes`
| 131,736.57 | 7,590.91 | 1.1% | 807,444.50 | 704,941.71 | 1.145 | 144,584.60 | 0.9% | 0.01 | `worst case for radix tree`
| 45.50 | 21,978,369.95 | 1.1% | 902.00 | 232.36 | 3.882 | 132.00 | 0.0% | 0.01 | `create and destroy`
| 164.29 | 6,086,873.38 | 0.0% | 3,107.03 | 604.19 | 5.142 | 558.59 | 0.0% | 1.96 | `point reads`
| 161.05 | 6,209,395.38 | 0.1% | 3,036.76 | 592.21 | 5.128 | 539.35 | 0.0% | 1.93 | `prefix reads`
| 239.55 | 4,174,539.38 | 0.1% | 3,722.71 | 880.68 | 4.227 | 692.00 | 0.0% | 2.86 | `range reads`
| 354.75 | 2,818,919.14 | 0.7% | 4,523.64 | 1,304.75 | 3.467 | 720.22 | 2.0% | 4.23 | `point writes`
| 345.32 | 2,895,878.47 | 0.1% | 4,484.57 | 1,270.31 | 3.530 | 705.00 | 1.8% | 4.12 | `prefix writes`
| 193.48 | 5,168,547.42 | 0.1% | 2,224.10 | 711.72 | 3.125 | 377.17 | 3.3% | 2.32 | `range writes`
| 404.89 | 2,469,777.50 | 2.4% | 6,855.96 | 1,489.70 | 4.602 | 1,227.82 | 1.3% | 0.05 | `monotonic increasing point writes`
| 134,231.80 | 7,449.80 | 1.9% | 812,045.25 | 495,770.40 | 1.638 | 151,246.50 | 0.9% | 0.01 | `worst case for radix tree`
| 37.80 | 26,454,311.17 | 0.4% | 701.00 | 139.14 | 5.038 | 102.00 | 0.0% | 0.01 | `create and destroy`
## Radix tree (this implementation)
| ns/op | op/s | err% | ins/op | cyc/op | IPC | bra/op | miss% | total | benchmark
|--------------------:|--------------------:|--------:|----------------:|----------------:|-------:|---------------:|--------:|----------:|:----------
| 12.36 | 80,885,626.43 | 0.2% | 243.56 | 63.62 | 3.828 | 31.07 | 0.6% | 0.15 | `point reads`
| 14.18 | 70,502,196.81 | 0.1% | 297.72 | 73.13 | 4.071 | 40.31 | 0.5% | 0.17 | `prefix reads`
| 33.44 | 29,901,623.04 | 0.1% | 767.90 | 172.42 | 4.454 | 101.32 | 0.2% | 0.40 | `range reads`
| 19.48 | 51,342,564.70 | 0.3% | 374.45 | 100.43 | 3.728 | 48.92 | 0.5% | 0.23 | `point writes`
| 37.46 | 26,694,471.44 | 0.1% | 672.00 | 193.14 | 3.479 | 101.28 | 0.3% | 0.45 | `prefix writes`
| 38.78 | 25,784,784.34 | 0.0% | 738.26 | 199.93 | 3.693 | 111.59 | 0.1% | 0.47 | `range writes`
| 76.05 | 13,148,995.74 | 0.7% | 1,450.77 | 397.16 | 3.653 | 275.72 | 0.0% | 0.01 | `monotonic increasing point writes`
| 286,920.33 | 3,485.29 | 0.4% | 4,117,948.00 | 1,521,352.00 | 2.707 | 714,833.00 | 0.1% | 0.01 | `worst case for radix tree`
| 95.66 | 10,453,798.72 | 0.5% | 1,986.00 | 495.04 | 4.012 | 315.00 | 0.0% | 0.01 | `create and destroy`
| 12.89 | 77,565,115.56 | 0.1% | 244.55 | 47.43 | 5.155 | 34.21 | 0.6% | 0.15 | `point reads`
| 15.11 | 66,162,047.76 | 0.1% | 297.79 | 55.60 | 5.356 | 43.23 | 0.4% | 0.18 | `prefix reads`
| 36.29 | 27,559,358.29 | 0.1% | 783.16 | 133.44 | 5.869 | 109.52 | 0.2% | 0.43 | `range reads`
| 20.53 | 48,719,405.55 | 0.1% | 381.81 | 75.51 | 5.057 | 51.04 | 0.5% | 0.25 | `point writes`
| 39.37 | 25,402,042.40 | 0.1% | 685.00 | 144.83 | 4.730 | 106.72 | 0.3% | 0.47 | `prefix writes`
| 43.78 | 22,843,841.63 | 0.1% | 800.40 | 161.06 | 4.970 | 127.36 | 0.1% | 0.53 | `range writes`
| 78.37 | 12,760,008.75 | 1.0% | 1,452.61 | 288.24 | 5.040 | 278.69 | 0.1% | 0.01 | `monotonic increasing point writes`
| 322,885.50 | 3,097.07 | 1.5% | 4,362,382.00 | 1,183,852.00 | 3.685 | 765,301.00 | 0.1% | 0.01 | `worst case for radix tree`
| 99.99 | 10,000,718.79 | 0.4% | 1,775.00 | 367.93 | 4.824 | 288.00 | 0.0% | 0.01 | `create and destroy`
# "Real data" test
@@ -51,13 +51,13 @@ Point queries only. Gc ratio is the ratio of time spent doing garbage collection
## skip list
```
Check: 4.53508 seconds, 371.81 MB/s, Add: 3.81222 seconds, 150.919 MB/s, Gc ratio: 33.66%, Peak idle memory: 5.61007e+06
Check: 4.62967 seconds, 352.195 MB/s, Add: 3.34177 seconds, 167.771 MB/s, Gc ratio: 37.9399%, Peak idle memory: 5.51852e+06
```
## radix tree
```
Check: 0.957735 seconds, 1760.6 MB/s, Add: 1.19942 seconds, 479.678 MB/s, Gc ratio: 38.6069%, Peak idle memory: 2.05667e+06
Check: 1.00477 seconds, 1622.8 MB/s, Add: 1.21142 seconds, 462.808 MB/s, Gc ratio: 39.4716%, Peak idle memory: 2.0226e+06
```
## hash table
@@ -65,6 +65,6 @@ Check: 0.957735 seconds, 1760.6 MB/s, Add: 1.19942 seconds, 479.678 MB/s, Gc rat
(The hash table implementation doesn't work on range queries, and its purpose is to provide an idea of how fast point queries can be)
```
Check: 0.804598 seconds, 2095.69 MB/s, Add: 0.671221 seconds, 857.147 MB/s, Gc ratio: 35.0034%, Peak idle memory: 0
Check: 0.854254 seconds, 1908.74 MB/s, Add: 0.632626 seconds, 886.232 MB/s, Gc ratio: 41.0827%, Peak idle memory: 0
```
+7 -6
View File
@@ -1,5 +1,6 @@
#include <ConflictSet.h>
#include <algorithm>
#include <cerrno>
#include <chrono>
#include <cstdio>
@@ -77,10 +78,10 @@ int main(int argc, const char **argv) {
begin = end + 1;
end = (uint8_t *)memchr(begin, '\n', size);
if (line.size() > 0 && line[0] == 'P') {
write = line.subspan(2, line.size());
} else if (line.size() > 0 && line[0] == 'L') {
reads.push_back(line.subspan(2, line.size()));
if (line.size() >= 2 && line[0] == 'P') {
write = line.subspan(2, line.size() - 2);
} else if (line.size() >= 2 && line[0] == 'L') {
reads.push_back(line.subspan(2, line.size() - 2));
} else if (line.empty()) {
{
readRanges.resize(reads.size());
@@ -90,7 +91,7 @@ int main(int argc, const char **argv) {
iter->begin.len = read.size();
checkBytes += read.size();
iter->end.len = 0;
iter->readVersion = version - 100;
iter->readVersion = std::max<int64_t>(0, version - 100);
++iter;
}
}
@@ -121,7 +122,7 @@ int main(int argc, const char **argv) {
}
timer = now();
cs.setOldestVersion(version - 10000);
cs.setOldestVersion(std::max<int64_t>(0, version - 10000));
gcTime += now() - timer;
}
}
+1
View File
@@ -12,6 +12,7 @@
#include <sys/ioctl.h>
#include <sys/resource.h>
#include <sys/socket.h>
#include <sys/syscall.h>
#include <sys/types.h>
#include <sys/uio.h>
#include <thread>
+8 -3
View File
@@ -38,6 +38,9 @@ std::span<const uint8_t> keyAfter(Arena &arena, std::span<const uint8_t> key) {
std::span<const uint8_t> copyToArena(Arena &arena,
std::span<const uint8_t> key) {
if (key.size() == 0) {
return std::span<const uint8_t>();
}
auto result = std::span<uint8_t>(new (arena) uint8_t[key.size()], key.size());
memcpy(result.data(), key.data(), key.size());
return result;
@@ -97,7 +100,7 @@ force_inline bool getCharacter(const KeyInfo &ki, int character,
bool operator<(const KeyInfo &lhs, const KeyInfo &rhs) {
int i = std::min(lhs.key.size(), rhs.key.size());
int c = memcmp(lhs.key.data(), rhs.key.data(), i);
int c = i > 0 ? memcmp(lhs.key.data(), rhs.key.data(), i) : 0;
if (c != 0)
return c < 0;
@@ -287,7 +290,8 @@ private:
static force_inline bool less(const uint8_t *a, int aLen, const uint8_t *b,
int bLen) {
int c = memcmp(a, b, std::min(aLen, bLen));
int n = std::min(aLen, bLen);
int c = n > 0 ? memcmp(a, b, n) : 0;
if (c < 0)
return true;
if (c > 0)
@@ -754,7 +758,8 @@ struct __attribute__((visibility("hidden"))) ConflictSet::Impl {
void addWrites(const ConflictSet::WriteRange *writes, int count,
int64_t writeVersion) {
auto points = std::vector<KeyInfo>(count * 2);
auto points = std::vector<KeyInfo>();
points.reserve(count * 2);
Arena arena;
for (int r = 0; r < count; r++) {
+43
View File
@@ -0,0 +1,43 @@
#!/bin/bash
set -euxo pipefail
LLVM_VERSION="${LLVM_VERSION:-21}"
MSAN_PREFIX="${MSAN_PREFIX:-$PWD/msan}"
JOBS="${JOBS:-$(nproc)}"
cd /tmp
rm -rf libcxx-msan
mkdir libcxx-msan
cd libcxx-msan
git clone --depth=1 "https://github.com/llvm/llvm-project.git" -b "release/${LLVM_VERSION}.x"
cmake -S llvm-project/runtimes -B build_msan \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_CXX_COMPILER="clang++-${LLVM_VERSION}" \
-DCMAKE_C_COMPILER="clang-${LLVM_VERSION}" \
-DCMAKE_INSTALL_PREFIX="${MSAN_PREFIX}" \
-DLLVM_ENABLE_RUNTIMES="libcxx;libcxxabi;libunwind" \
-DLLVM_USE_SANITIZER=MemoryWithOrigins
cmake --build build_msan -j"${JOBS}"
cmake --install build_msan
cmake -S llvm-project/runtimes -B build_nomsan \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_CXX_COMPILER="clang++-${LLVM_VERSION}" \
-DCMAKE_C_COMPILER="clang-${LLVM_VERSION}" \
-DCMAKE_INSTALL_PREFIX="${MSAN_PREFIX}" \
-DLLVM_ENABLE_RUNTIMES="libunwind"
cmake --build build_nomsan -j"${JOBS}"
cmake --install build_nomsan
VERSION="$(clang-"${LLVM_VERSION}" --version | head -n1 | sed -E 's/.*clang version ([0-9.]+).*/\1/')"
TARBALL="msan-toolchain-${VERSION}.tar.zst"
tar --zstd -cf "${TARBALL}" -C "${MSAN_PREFIX}" .
TARBALL_PATH="$(pwd)/${TARBALL}"
echo "Created: ${TARBALL_PATH}"
+23 -9
View File
@@ -27,23 +27,37 @@ class Result(enum.Enum):
TOO_OLD = 2
def write(begin: bytes, end: Optional[bytes] = None) -> WriteRange:
b = (ctypes.c_ubyte * len(begin)).from_buffer(bytearray(begin))
def _make_key(buf: bytes) -> tuple[_Key, bytearray]:
"""Create a _Key and a backing bytearray that must be kept alive."""
backing = bytearray(buf)
array = (ctypes.c_ubyte * len(backing)).from_buffer(backing)
return _Key(array, len(array)), backing
def write(begin: bytes, end: Optional[bytes] = None) -> WriteRange:
begin_key, begin_buf = _make_key(begin)
if end is None:
e = (ctypes.c_ubyte * 0)()
end_key = _Key((ctypes.c_ubyte * 0)(), 0)
end_buf = None
else:
e = (ctypes.c_ubyte * len(end)).from_buffer(bytearray(end))
return WriteRange(_Key(b, len(b)), _Key(e, len(e)))
end_key, end_buf = _make_key(end)
result = WriteRange(begin_key, end_key)
result._begin_buf = begin_buf
result._end_buf = end_buf
return result
def read(version: int, begin: bytes, end: Optional[bytes] = None) -> ReadRange:
b = (ctypes.c_ubyte * len(begin)).from_buffer(bytearray(begin))
begin_key, begin_buf = _make_key(begin)
if end is None:
e = (ctypes.c_ubyte * 0)()
end_key = _Key((ctypes.c_ubyte * 0)(), 0)
end_buf = None
else:
e = (ctypes.c_ubyte * len(end)).from_buffer(bytearray(end))
return ReadRange(_Key(b, len(b)), _Key(e, len(e)), version)
end_key, end_buf = _make_key(end)
result = ReadRange(begin_key, end_key, version)
result._begin_buf = begin_buf
result._end_buf = end_buf
return result
class ConflictSet:
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